rather than GC landscapes over the genome
We focused on 3,701 GC events delimited by five hundred bp or less (GC500 sequences). Only motifs with E-value<1?10 ?10 are shown and ranked by E-value. Presence indicates the total number of motifs per 100 GC500 sequences, including the possible multiple presence in a single sequence. For display purposes, sequence motifs are chosen between forward and reverse to maximize the presence of A and/or C nucleotides.
Earlier in the day analyses into the D. pseuddobscura recognized a somewhat positive relationship anywhere between recombination rate and easy repeats, as well as the themes CACAC , CCTCCCT and you will CCCCACCCC . An identical study in the D. persimilis found a positive organization out of rate on the CCNCCNTNNCCNC sequence theme often proves to be associated with the human recombination prices . A more recent data reported new motif GTGGAAA are introduce close situations from inside the D. melanogaster . All of our investigation confirms the significant enrichment of some ones sequences ( CACAC and you can CCTCCCT ) and you may finds brand new ones, since there is zero service to possess CCCCACCCC or GTGGAAA because motifs for the increased recombination inside D.